Paper on elevation of LD in Drosophila on BioRxiv

I posted my latest paper with Dmitri Petrov on BioRxiv on the Elevation of linkage disequilibrium above neutral expectations in ancestral and derived populations of Drosophila melanogaster. In this paper, we show that signatures of elevated LD and haplotype homozygosity are common in multiple populations of D. melanogaster and that signatures of partial soft sweeps are generic to multiple populations. We welcome any feedback or questions about the paper.